Welcome to T3/Oat [DEV]
T3/Oat archive site last updated March 2020
T3/Oat is the repository of oat phenotype and genotype data for the Global Oat Genetics Database, a project initiated in January 2014. For more information see the Oat Global website.
Data Usage Policy
The data on this database is shared according to the Toronto agreement. Click here to view the full data usage policy.
Citation
If data on The Triticeae Toolbox was relevant to analyses or findings that you publish, please cite:
Blake, V., Birkett, C.L., Matthews, D.E., Hane, D., Bradbury, P., Jannink, J. 2016. The Triticeae Toolbox: Combining Phenotype and Genotype Data to Advance Small-Grains Breeding. The Plant Genome. doi: 10.3835/PlantGenome2014.12.0099.
Speaking of Oats...
February 26, 2020
T3 gave the January Speaking of Oats webinar organized by Oat Global and the Oat Newsletter, where we discussed practical applications of T3/Breedbase for the oat community and an overview of adding and extracting data from the new database.
A video recording of the webinar is now available on YouTube and a transcript of the Q&A session (PDF) is available from the Oat Newsletter.
Breedbase Workshop Notes & Videos
September 10, 2020
T3 hosted a practical remote workshop demonstrating the process of uploading field trial data to the database. Notes from that workshop, which include step-by-step instructions on how to upload a sample dataset, are now available.
Video recordings of the workshop are available on the Breedbase YouTube Channel.
PepsiCo Oat Genome
June 23, 2020
Scab Forum Presentation
Dec 9, 2019
The presentation (with step-by-step screenshots of the demos) of T3/Breedbase given at the 2019 Wheat & Barley Scab Forum can be found here.
Accessions Loaded
Dec 16, 2019
Accession entries have been created for all ~24,000 accessions that were in T3/Classic. Accessions have associated breeding programs, synonyms and GRIN ID numbers.
Explore T3/Oat
To view most of the data on T3/Oat, you'll first need to create a free account.
Login
If you already have an account, login to get full access.
Use the Quick Search to find an Accession, Trial, Trait, etc by name:
Use the Search Wizard to explore the database or search individual data types:
Explore Experiments in the Search Wizard:
You must first log in to view the lists of experiments...
Upload Data
Contributing data to T3/Oat
Upload InstructionsPhenotype Upload Instructions: Instructions and general steps for adding phenotype trial data to T3/Oat.
Manage Phenotypic DataManage your Phenotypic Data to create spreadsheets for new uploads, add new data, and/or manage your existing uploads.
Upload FilesOr Upload Files for various other types of data.
Submit Genotype Data
Please Contact Us if you have genotype data you would like to submit to T3/Oat.
User Guides
New to T3/Oat?
View the comprehensive Documentation from the Breedbase team to learn about available features or watch the detailed Video Tutorials.
T3/Oat is open source software and available under the MIT License and may be downloaded from GitHub.
Working
